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Rice Gene Annotation
Pseudomolecules
Current Pseudomolecules
Plant GOSlim Assignment of Rice Protiens
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Pseudomolecule Version Converter
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Search Functions
Sequence (BLAST) Search
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Rice Genome Annotation Project BLAST Search
Select type of BLAST Search
blastn
blastp
blastx
tblastn
tblastx
Search a nucleotide database using a nucleotide query
Enter Query Sequence
Enter DNA FASTA sequence:
or upload a file of DNA FASTA sequence:
Choose Database to Search
Select the BLAST database you would like to search:
Genes in MSU RGAP Release 7 - Genomic Sequences
Genes in MSU RGAP Release 7 - CDS Sequences
Os-Nipponbare-Reference-IRGSP-1.0 Pseudomolecules
All Rice BAC and PAC Sequences in GenBank
Oryza sativa PUTs
Avena sativa PUTs
Brachypodium distachyon PUTs
Festuca arundinacea PUTs
Hordeum vulgare PUTs
Panicum virgatum PUTs
Saccharum officinarum PUTs
Secale cereale PUTs
Sorghum bicolor PUTs
Sorghum propinquum PUTs
Triticum aestivum PUTs
Triticum monococcum PUTs
Triticum turgidum subsp durum PUTs
Zea_mays PUTs
All Poaceae PUTs
Rice Marker Sequences
Rice full length cDNAs in GenBank
Rice FSTs
BGI Indica Contigs
Oryza Repeat Database
Gramineae Repeat Database
TAIR Arabidopsis Annotation Release 10 CDS
TAIR Arabidopsis Annotation Release 10 Genomic
Submit BLAST Search
Search selected nucleotide database using blastn
Optional BLAST Parameters
Expect Threshold:
1e-200
1e-100
1e-50
1e-20
1e-10
1e-5
1e-4
1e-3
1e-2
1e-1
1
10
100
1000
Max Number of Alignments:
1
5
10
20
50
100
250
500
Max Number of Descriptions:
1
5
10
20
50
100
250
500
Word Length:
7
11
15
Filter:
none
dust
View Filter:
no
yes
Matrix:
PAM30
PAM70
BLOSUM80
BLOSUM62
BLOSUM45
Strand:
both
top
bottom
This work is supported by grants (DBI-0321538/DBI-0834043) from the National Science Foundation.
