| |
|
| Superfamily: |
F-box proteins |
| Contact: |
Jitendra Khurana |
| Organization: |
University of Delhi |
| Website: |
http://genomeindia.org/DPMB/index.htm |
| Source: |
Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK,
Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and
spatial gene expression during panicle and seed development, and regulation by
light and abiotic stress. Plant Physiology 143(4):1467-83 |
| Criteria: |
BLAST search using the Hidden Markov Model (HMM) profile of F-box domain (PF00646) followed by domain analysis using SMART and PFam with an E-value cut off of less than 1.0. The identified 687 proteins were further classified into 10 subfamilies based upon their domain organization as indicated by the subfamily name. |
| |
|
LOC_Os01g08830 |
| Gene Name: |
OsFBDUF1 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF1 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP002484 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g22400 |
| Gene Name: |
OsFBDUF2 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF2 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP002971 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g22430 |
| Gene Name: |
OsFBDUF3 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF3 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP002971 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g22480 |
| Gene Name: |
OsFBDUF4 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF4 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP002971 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g48250 |
| Gene Name: |
OsFBDUF5 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF5 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003223 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g56710 |
| Gene Name: |
OsFBDUF6 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF6 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP003265 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g56740 |
| Gene Name: |
OsFBDUF7 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF7 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003265 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g56750 |
| Gene Name: |
OsFBDUF8 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF8 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003265 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g71430 |
| Gene Name: |
OsFBDUF9 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF9 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004031 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g71440 |
| Gene Name: |
OsFBDUF10 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF10 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004031 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g71460 |
| Gene Name: |
OsFBDUF11 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF11 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP004031 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g03660 |
| Gene Name: |
OsFBDUF12 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF12 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004886 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g44990 |
| Gene Name: |
OsFBDUF13 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF13 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP005055 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os02g54330 |
| Gene Name: |
OsFBDUF14 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF14 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004849 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g40370 |
| Gene Name: |
OsFBDUF15 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF15 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC092778 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g50050 |
| Gene Name: |
OsFBDUF16 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF16 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC087797 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g51090 |
| Gene Name: |
OsFBDUF17 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF17 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC147426 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g58764 |
| Gene Name: |
OsFBDUF18 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF18 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC108906 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g63850 |
| Gene Name: |
OsFBDUF19 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF19 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC128647 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g25140 |
| Gene Name: |
OsFBDUF20 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF20 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AL606599 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g26240 |
| Gene Name: |
OsFBDUF21 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF21 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AL662972 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g39660 |
| Gene Name: |
OsFBDUF22 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF22 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AL606447 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g03210 |
| Gene Name: |
OsFBDUF23 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF23 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC093089, AC079021 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g18660 |
| Gene Name: |
OsFBDUF24 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF24 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC136522 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g40610 |
| Gene Name: |
OsFBDUF25 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF25 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC118289 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g46050 |
| Gene Name: |
OsFBDUF26 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF26 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC119291 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g46060 |
| Gene Name: |
OsFBDUF27 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF27 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC119291 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g46150 |
| Gene Name: |
OsFBDUF28 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF28 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC119291 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g46160 |
| Gene Name: |
OsFBDUF29 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF29 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC119291 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g05580 |
| Gene Name: |
OsFBDUF30 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF30 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g05600 |
| Gene Name: |
OsFBDUF31 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF31 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g05610 |
| Gene Name: |
OsFBDUF32 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF32 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g05620 |
| Gene Name: |
OsFBDUF33 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF33 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003632 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g44920 |
| Gene Name: |
OsFBDUF34 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF34 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP005760 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os06g49340 |
| Gene Name: |
OsFBDUF35 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF35 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003761 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g23890 |
| Gene Name: |
OsFBDUF36 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF36 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP005831 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g25800 |
| Gene Name: |
OsFBDUF37 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF37 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP005451 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g33400 |
| Gene Name: |
OsFBDUF38 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF38 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP005103 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g48940 |
| Gene Name: |
OsFBDUF39 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF39 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP003816 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g03300 |
| Gene Name: |
OsFBDUF40 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF40 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003886 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g03320 |
| Gene Name: |
OsFBDUF41 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF41 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP003886 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g06710 |
| Gene Name: |
OsFBDUF42 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF42 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP005847 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g06780 |
| Gene Name: |
OsFBDUF43 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF43 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP005605 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g24830 |
| Gene Name: |
OsFBDUF44 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF44 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004621 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g33010 |
| Gene Name: |
OsFBDUF45 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF45 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP004463 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os08g34890 |
| Gene Name: |
OsFBDUF46 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF46 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AP003798 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os09g37590 |
| Gene Name: |
OsFBDUF47 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF47 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AP005862 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g37540 |
| Gene Name: |
OsFBDUF48 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF48 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC051634 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g37570 |
| Gene Name: |
OsFBDUF49 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF49 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC051634 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g36350 |
| Gene Name: |
OsFBDUF50 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF50 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC136149 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g36610 |
| Gene Name: |
OsFBDUF51 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF51 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC109929 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g37060 |
| Gene Name: |
OsFBDUF52 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF52 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137589 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g37300 |
| Gene Name: |
OsFBDUF53 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF53 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137588 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g37390 |
| Gene Name: |
OsFBDUF54 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF54 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137588 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38100 |
| Gene Name: |
OsFBDUF55 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF55 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38120 |
| Gene Name: |
OsFBDUF56 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF56 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38130 |
| Gene Name: |
OsFBDUF57 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF57 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38140 |
| Gene Name: |
OsFBDUF58 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF58 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38180 |
| Gene Name: |
OsFBDUF59 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF59 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38200 |
| Gene Name: |
OsFBDUF60 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF60 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38230 |
| Gene Name: |
OsFBDUF61 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF61 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC137744 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g38500 |
| Gene Name: |
OsFBDUF62 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF62 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC114828 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g39609 |
| Gene Name: |
OsFBDUF63 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF64 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC120984 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g39609 |
| Gene Name: |
OsFBDUF64 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF64 - F-box and DUF domain containing protein |
| GenBank Genomic Acc: |
AC120984 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g05609 |
| Gene Name: |
OsFBDUF65 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBO24 - F-box and other domain containing protein |
| GenBank Genomic Acc: |
AL929350 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g39520 |
| Gene Name: |
OsFBDUF66 |
| Gene Description: |
F-box and DUF domain containing protein
|
| MSU Annotation: |
OsFBDUF66 - F-box and DUF domain containing protein, expressed |
| GenBank Genomic Acc: |
AL772423 |
| Structural Annotation: |
|
|
|
| |
