| |
|
| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
| |
|
Chr4:9669346..9668837 |
| Gene Name: |
RCLEA1 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, putative, expressed
|
| Comment: |
Pseudogene. This annotation is supported by TIGR Rice Transcript Assembly TA19150_4530 and FL-cDNA AK061137 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g73700 |
| Gene Name: |
RCLEA2 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, putative
|
| MSU Annotation: |
RCLEA2 - Root cap and Late embryogenesis related family protein precursor, putative, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g73710 |
| Gene Name: |
RCLEA3 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, putative
|
| MSU Annotation: |
RCLEA3 - Root cap and Late embryogenesis related family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g73720 |
| Gene Name: |
RCLEA4 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, expressed
|
| MSU Annotation: |
RCLEA4 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g73730 |
| Gene Name: |
RCLEA5 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, expressed
|
| MSU Annotation: |
RCLEA5 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os04g33520 |
| Gene Name: |
RCLEA6 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, expressed
|
| MSU Annotation: |
RCLEA6 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g01680 |
| Gene Name: |
RCLEA7 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, expressed
|
| MSU Annotation: |
RCLEA7 - Root cap and Late embryogenesis related family protein precursor, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g47940 |
| Gene Name: |
RCLEA8 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor
|
| MSU Annotation: |
RCLEA8 - Root cap and Late embryogenesis related family protein precursor |
| Comment: |
This annotation has altered the donor exon by 7 bp. This is consistent with paralog structure and preserves the crucial cysteine arrangement that the annotation omits. |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os11g05360 |
| Gene Name: |
RCLEA9 |
| Gene Description: |
Root cap and Late embryogenesis related family protein precursor, putative
|
| MSU Annotation: |
RCLEA9 - Root cap and Late embryogenesis related family protein precursor, putative |
| Structural Annotation: |
|
|
|
| |
