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| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
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Chr11:14702221..14701897 |
| Gene Name: |
MEGL2 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Pseudogene. Community annotation high confidence pseudogene possesses a non-canonical splice site donor, but is very similar to a half-dozen paralogs some of them nearby in this cluster. |
| Structural Annotation: |
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Chr11:14788013..14787620 |
| Gene Name: |
MEGL4 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Community annotation is a high confidence prediction is very similar to a half-dozen paralogs some of them nearby in this cluster. |
| Structural Annotation: |
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Chr11:14847509..14847095 |
| Gene Name: |
MEGL6 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Community annotation is a high confidence prediction is very similar to a half-dozen paralogs some of them nearby in this cluster. |
| Structural Annotation: |
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Chr2:7170344..7169987 |
| Gene Name: |
MEGL1 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Pseudogene. Community annotation fits nicely with close paralogs and homologs from other species |
| Structural Annotation: |
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Chr7:5689029..5689428 |
| Gene Name: |
MEGL15 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
The community annotation has a hybrid cysteine configuration between a defensin and MEG family gene |
| Structural Annotation: |
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Chr9:5949962..5950439 |
| Gene Name: |
MEGL16 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Community annotation structure has high confidence based on alignment with neighboring paralog and numerous homologs from other grasses. |
| Structural Annotation: |
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Chr9:5958501..5958686 |
| Gene Name: |
MEGL17 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| Comment: |
Pseudogene. Highly similar to neighboring paralog and numerous homologs from other grasses, but lacks a signal peptide. |
| Structural Annotation: |
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LOC_Os01g33550 |
| Gene Name: |
MEGL19 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| MSU Annotation: |
MEGL19 - Maternally expressed gene MEG family protein precursor, putative |
| Structural Annotation: |
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LOC_Os01g42150 |
| Gene Name: |
MEGL13 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, expressed
|
| MSU Annotation: |
MEGL13 - Maternally expressed gene MEG family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g42160 |
| Gene Name: |
MEGL14 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
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| MSU Annotation: |
MEGL14 - Maternally expressed gene MEG family protein precursor, putative, expressed |
| Structural Annotation: |
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LOC_Os02g13450 |
| Gene Name: |
MEGL7 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| MSU Annotation: |
MEGL7 - Maternally expressed gene MEG family protein precursor, putative |
| Structural Annotation: |
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LOC_Os04g05500 |
| Gene Name: |
MEGL8 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor
|
| MSU Annotation: |
MEGL8 - Maternally expressed gene MEG family protein precursor |
| Comment: |
Community annotation possesses a revised acceptor site for the second intron and removes third exon. Corrected gene perfectly matches 2 neighboring homologs. |
| Structural Annotation: |
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LOC_Os04g05550 |
| Gene Name: |
MEGL10 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor
|
| MSU Annotation: |
MEGL10 - Maternally expressed gene MEG family protein precursor |
| Comment: |
Community annotation includes first 12 bp (4 aa) of signal peptide. |
| Structural Annotation: |
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LOC_Os04g06340 |
| Gene Name: |
MEGL11 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor
|
| MSU Annotation: |
MEGL11 - Maternally expressed gene MEG family protein precursor |
| Comment: |
Community annotation has a revised acceptor site for the second intron and removes the third exon. Community annotation structure perfectly matches 4 neighboring paralogs. |
| Structural Annotation: |
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LOC_Os04g06530 |
| Gene Name: |
MEGL9 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| MSU Annotation: |
MEGL12 - Maternally expressed gene MEG family protein precursor |
| Comment: |
Pseudogene. The community annotation possesses a non-canonical acceptor site based on alignment with 2 close paralogs surrounding it. |
| Structural Annotation: |
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LOC_Os04g06530 |
| Gene Name: |
MEGL12 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor
|
| MSU Annotation: |
MEGL12 - Maternally expressed gene MEG family protein precursor |
| Comment: |
Community annotation has a revised acceptor site for the second intron and removes the third exon. Community annotation structure perfectly matches 4 neighboring paralogs. |
| Structural Annotation: |
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LOC_Os11g26580 |
| Gene Name: |
MEGL18 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
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| MSU Annotation: |
MEGL18 - Maternally expressed gene MEG family protein precursor, putative |
| Structural Annotation: |
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LOC_Os11g26600 |
| Gene Name: |
MEGL3 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
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| MSU Annotation: |
MEGL3 - Maternally expressed gene MEG family protein precursor, putative |
| Structural Annotation: |
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LOC_Os11g26710 |
| Gene Name: |
MEGL5 |
| Gene Description: |
Maternally expressed gene (MEG) family protein precursor, putative
|
| MSU Annotation: |
MEGL5 - Maternally expressed gene MEG family protein precursor, putative, expressed |
| Structural Annotation: |
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