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| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
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Chr11:14884145..14884387 |
| Gene Name: |
RALFL40 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| Comment: |
The community annotation is a high confidence prediction is similar to 9 paralogs. |
| Structural Annotation: |
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Chr4:16884609..16884890 |
| Gene Name: |
RALFL33 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| Comment: |
High confidence prediction is in a cluster with 4 highly similar paralogs and is consistent with GlimmerHMM prediction. |
| Structural Annotation: |
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Chr4:18646262..18646559 |
| Gene Name: |
RALFL38 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| Comment: |
Pseudogene. The community annotation one-exon gene structure is consistent with 8 nearby paralogs. |
| Structural Annotation: |
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Chr6:23781367..23780849 |
| Gene Name: |
RALFL2 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| Comment: |
Pseudogene. High-confidence gene prediction |
| Structural Annotation: |
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Chr9:13980556..13981017 |
| Gene Name: |
RALFL3 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| Comment: |
Pseudogene. High confidence prediction based upon similarity to 4 paralogs. |
| Structural Annotation: |
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LOC_Os01g10470 |
| Gene Name: |
RALFL17 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL17 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g15320 |
| Gene Name: |
RALFL9 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL9 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g25540 |
| Gene Name: |
RALFL6 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL6 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g25560 |
| Gene Name: |
RALFL7 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL7 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g70690 |
| Gene Name: |
RALFL1 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL1 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os02g44940 |
| Gene Name: |
RALFL8 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL8 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g22440 |
| Gene Name: |
RALFL15 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL15 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os04g28720 |
| Gene Name: |
RALFL32 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL32 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os04g28830 |
| Gene Name: |
RALFL34 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL34 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os04g28840 |
| Gene Name: |
RALFL35 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL35 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os04g28850 |
| Gene Name: |
RALFL36 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g31410 |
| Gene Name: |
RALFL37 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL37 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g31430 |
| Gene Name: |
RALFL30 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL30 - Rapid ALkalinization Factor RALF family protein precursor, putative, expressed |
| Structural Annotation: |
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LOC_Os04g31460 |
| Gene Name: |
RALFL39 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL39 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g31484 |
| Gene Name: |
RALFL20 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor
|
| MSU Annotation: |
RALFL20 - Rapid ALkalinization Factor RALF family protein precursor |
| Comment: |
The community annotation has a reviesed translational frame that is highly supported by homologous proteins in other species. |
| Structural Annotation: |
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LOC_Os04g31520 |
| Gene Name: |
RALFL21 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL21 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g31550 |
| Gene Name: |
RALFL22 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL22 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os04g54090 |
| Gene Name: |
RALFL18 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor
|
| MSU Annotation: |
RALFL18 - Rapid ALkalinization Factor RALF family protein precursor |
| Comment: |
Possible pseudogene based on alignment with close homologs |
| Structural Annotation: |
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LOC_Os05g11330 |
| Gene Name: |
RALFL19 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL19 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g29730 |
| Gene Name: |
RALFL28 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL28 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os07g13310 |
| Gene Name: |
RALFL10 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL10 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os07g13380 |
| Gene Name: |
RALFL11 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL11 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os07g13440 |
| Gene Name: |
RALFL12 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL12 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os07g13450 |
| Gene Name: |
RALFL13 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL13 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os10g18170 |
| Gene Name: |
RALFL16 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL16 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os10g41980 |
| Gene Name: |
RALFL26 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL26 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os10g41999 |
| Gene Name: |
RALFL27 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL27 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os10g42020 |
| Gene Name: |
RALFL29 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL29 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os11g26190 |
| Gene Name: |
RALFL23 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL23 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os11g26340 |
| Gene Name: |
RALFL24 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
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| MSU Annotation: |
RALFL24 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os11g26880 |
| Gene Name: |
RALFL14 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL14 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g11660 |
| Gene Name: |
RALFL45 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL45 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g12000 |
| Gene Name: |
RALFL46 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL46 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g21760 |
| Gene Name: |
RALFL25 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, putative
|
| MSU Annotation: |
RALFL25 - Rapid ALkalinization Factor RALF family protein precursor, putative |
| Structural Annotation: |
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LOC_Os12g35670 |
| Gene Name: |
RALFL4 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL4 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g35690 |
| Gene Name: |
RALFL5 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL5 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g38330 |
| Gene Name: |
RALFL44 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL44 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g38340 |
| Gene Name: |
RALFL42 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL42 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g38350 |
| Gene Name: |
RALFL43 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL43 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g38360 |
| Gene Name: |
RALFL31 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL31 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g38370 |
| Gene Name: |
RALFL41 |
| Gene Description: |
Rapid ALkalinization Factor (RALF) family protein precursor, expressed
|
| MSU Annotation: |
RALFL41 - Rapid ALkalinization Factor RALF family protein precursor, expressed |
| Structural Annotation: |
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