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| Superfamily: |
Cysteine Rich Peptides |
| Contact: |
Kevin Silverstein |
| Organization: |
University of Minnesota |
| Source: |
Silverstein, K.A.T., Moskal, W.A., Jr., Wu, H., Underwood, B.A., Graham, M.A., Town, C.D, and VandenBosch, K.A. (2007) Small cysteine peptides resembling antimicrobial peptides have been under-predicted in plants. Plant J. 51(2):262-80 |
| Criteria: |
Iterative HMM family-based searches, starting with known cysteine-rich antimicrobial sequences. |
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Chr12:15825848..15826129 |
| Gene Name: |
THION42 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| Comment: |
High confidence single exon gene is in a cluster with 4 similar thionin genes with the same gene structure plus four additional paralogs on chromosome 3. Gene predicted by GlimmerHMM. |
| Structural Annotation: |
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Chr12:15832839..15833137 |
| Gene Name: |
THION43 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| Comment: |
Pseudogene. High confidence single exon pseudogene is in a cluster with 3 similar thionin genes with the same gene structure plus four additional paralogs on chromosome 3. |
| Structural Annotation: |
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Chr6:18833177..18832544 |
| Gene Name: |
THION13 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| Comment: |
The 5'-end of this gene may not be correct based upon a dozen paralogs nearby, but the last two exons are correct. |
| Structural Annotation: |
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LOC_Os01g41140 |
| Gene Name: |
THION18 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION18 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g41170 |
| Gene Name: |
THION27 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION27 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os01g41180 |
| Gene Name: |
THION19 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION19 - Plant thionin family protein precursor, putative, expressed |
| Structural Annotation: |
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LOC_Os01g51270 |
| Gene Name: |
THION44 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION44 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os02g02630 |
| Gene Name: |
THION20 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION20 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os02g02650 |
| Gene Name: |
THION21 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION21 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os02g03480 |
| Gene Name: |
THION24 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION24 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os02g03520 |
| Gene Name: |
THION25 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION25 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os02g03800 |
| Gene Name: |
THION22 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION22 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os02g04190 |
| Gene Name: |
THION23 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION23 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g08710 |
| Gene Name: |
THION26 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION26 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g14300 |
| Gene Name: |
THION29 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION29 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g21880 |
| Gene Name: |
THION28 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION28 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g49270 |
| Gene Name: |
THION36 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION36 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os03g49280 |
| Gene Name: |
THION37 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION37 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os03g49300 |
| Gene Name: |
THION38 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION38 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os03g49310 |
| Gene Name: |
THION39 |
| Gene Description: |
Plant thionin family protein precursor
|
| MSU Annotation: |
THION39 - Plant thionin family protein precursor, expressed |
| Comment: |
This is annotated as a single exon gene based on 7 similar paralogs. |
| Structural Annotation: |
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LOC_Os03g64300 |
| Gene Name: |
THION30 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION30 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g31280 |
| Gene Name: |
THION1 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION1 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os06g31800 |
| Gene Name: |
THION2 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION2 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g31890 |
| Gene Name: |
THION3 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION3 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g31960 |
| Gene Name: |
THION4 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION5 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g31960 |
| Gene Name: |
THION5 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION5 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g32020 |
| Gene Name: |
THION6 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION6 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g32160 |
| Gene Name: |
THION7 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION7 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g32200 |
| Gene Name: |
THION8 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION8 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os06g32240 |
| Gene Name: |
THION9 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION9 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os06g32290 |
| Gene Name: |
THION10 |
| Gene Description: |
Plant thionin family protein precursor
|
| MSU Annotation: |
THION10 - Plant thionin family protein precursor |
| Comment: |
Pseudogene. Likely pseudogene based on alignment with close homologs and lack of upstream signal peptide |
| Structural Annotation: |
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LOC_Os06g32320 |
| Gene Name: |
THION11 |
| Gene Description: |
Plant thionin family protein precursor
|
| MSU Annotation: |
THION11 - Plant thionin family protein precursor |
| Comment: |
Pseudogene. Likely pseudogene based on alignment with close homologs and lack of upstream signal peptide |
| Structural Annotation: |
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LOC_Os06g32350 |
| Gene Name: |
THION12 |
| Gene Description: |
Plant thionin family protein precursor
|
| MSU Annotation: |
THION12 - Plant thionin family protein precursor |
| Comment: |
The three exon annotation is consistent with gene structure of 12 paralogs, and preserves the crucial internal cysteine triplet. |
| Structural Annotation: |
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LOC_Os06g32370 |
| Gene Name: |
THION16 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION16 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os06g32379 |
| Gene Name: |
THION17 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION17 - Plant thionin family protein precursor, putative |
| Comment: |
Pseudogene. High-confidence prediction shows evidence of a major internal deletion relative to neighboring paralog, but is more consistent with homologs in other species. |
| Structural Annotation: |
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LOC_Os06g32550 |
| Gene Name: |
THION14 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION14 - Plant thionin family protein precursor, putative, expressed |
| Structural Annotation: |
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LOC_Os06g32600 |
| Gene Name: |
THION15 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION15 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os09g11200 |
| Gene Name: |
THION33 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION33 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os09g11210 |
| Gene Name: |
THION35 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION35 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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LOC_Os09g24350 |
| Gene Name: |
THION32 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION32 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os11g15250 |
| Gene Name: |
THION31 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION31 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g26960 |
| Gene Name: |
THION34 |
| Gene Description: |
Plant thionin family protein precursor, expressed
|
| MSU Annotation: |
THION34 - Plant thionin family protein precursor, expressed |
| Structural Annotation: |
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LOC_Os12g26980 |
| Gene Name: |
THION40 |
| Gene Description: |
Plant thionin family protein precursor
|
| MSU Annotation: |
THION40 - Plant thionin family protein precursor |
| Comment: |
This is annotated as a single exon gene based on 7 similar paralogs. |
| Structural Annotation: |
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LOC_Os12g27020 |
| Gene Name: |
THION41 |
| Gene Description: |
Plant thionin family protein precursor, putative
|
| MSU Annotation: |
THION41 - Plant thionin family protein precursor, putative |
| Structural Annotation: |
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