|
|
 |
 |
| |
|
| Contact: |
Teerapong Buaboocha |
| Organization: |
Chulalongkorn University, Bangkok, Thailand |
| Source: |
Bongkoj Boonburapong, Teerapong Buaboocha (2007) Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins. BMC Plant Biology, 7:4 |
| Criteria: |
The Oryza sativa L. genome was searched against the Interpro database by five different methods including HMMPfam, HMMSmart, BlastProDom, ProfileScan and superfamily to find proteins that contain calcium-binding EF-hand motifs. Calmodulin-related proteins were identified based on amino acid sequence identity with rice CaM1 and CBL3 and phylogenetic analysis based on amino acid sequence alignments by ClustalX. |
| |
|
LOC_Os01g16240 |
| Gene Name: |
OsCam1-3 |
| Gene Description: |
Calmodulin
|
| MSU Annotation: |
OsCam1-3 - Calmodulin, expressed |
| GenBank Genomic Acc: |
AP000969 |
| Mutant Line/Info: |
AG211035 |
| Comment: |
AU184693
|
| Structural Annotation: |
|
|
|
| |
|
LOC_Os01g17190 |
| Gene Name: |
OsCam3 |
| Gene Description: |
Calmodulin
|
| MSU Annotation: |
OsCam3 - Calmodulin, expressed |
| GenBank Genomic Acc: |
AP000815 |
| Comment: |
AK058646
|
| Structural Annotation: |
|
|
|
| |
|
LOC_Os03g20370 |
| Gene Name: |
OsCam1-1 |
| Gene Description: |
Calmodulin
|
| MSU Annotation: |
OsCam1-1 - Calmodulin, expressed |
| GenBank Genomic Acc: |
AC119748 |
| Comment: |
AK059756
|
| Structural Annotation: |
|
|
|
| |
|
LOC_Os05g41210 |
| Gene Name: |
OsCam2 |
| Gene Description: |
Calmodulin
|
| MSU Annotation: |
OsCam2 - Calmodulin, expressed |
| GenBank Genomic Acc: |
AC129718 |
| Comment: |
AK059534
|
| Structural Annotation: |
|
|
|
| |
|
LOC_Os07g48780 |
| Gene Name: |
OsCam1-2 |
| Gene Description: |
Calmodulin
|
| MSU Annotation: |
OsCam1-2 - Calmodulin, expressed |
| GenBank Genomic Acc: |
AP003818 |
| Mutant Line/Info: |
AG024320, AG024645, AG212378, AG211036, AG211035 |
| Comment: |
AF441191
|
| Structural Annotation: |
|
|
|
| |
|
|
|
|
|
