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|
| Contact: |
Sanjay Kapoor |
| Organization: |
University of Delhi, South Campus |
| Source: |
Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S. (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics. 8:242. |
| Criteria: |
The protein has MADS domain as identified by HMM search and confirmed by NCBI-CD tool and SMART database.
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| |
|
Chr12:18600448..18600609 |
| Gene Name: |
OsMADS67 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| Comment: |
CM000149 |
| Structural Annotation: |
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LOC_Os01g10504 |
| Gene Name: |
OsMADS3 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS3 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK108568 |
| Structural Annotation: |
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LOC_Os01g11510 |
| Gene Name: |
OsMADS91 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS91 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g18420 |
| Gene Name: |
OsMADS88 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
|
| MSU Annotation: |
OsMADS88 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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|
LOC_Os01g18440 |
| Gene Name: |
OsMADS89 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
|
| MSU Annotation: |
OsMADS89 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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|
LOC_Os01g23750 |
| Gene Name: |
OsMADS92 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS92 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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LOC_Os01g23760 |
| Gene Name: |
OsMADS93 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS93 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g23770 |
| Gene Name: |
OsMADS94 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS94 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g23780 |
| Gene Name: |
OsMADS95 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS95 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g52680 |
| Gene Name: |
OsMADS32 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS32 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
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|
LOC_Os01g66030 |
| Gene Name: |
OsMADS2 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS2 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070894 |
| Structural Annotation: |
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|
LOC_Os01g66290 |
| Gene Name: |
OsMADS21 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS21 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070958 |
| Structural Annotation: |
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|
LOC_Os01g67890 |
| Gene Name: |
OsMADS96 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS96 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g68420 |
| Gene Name: |
OsMADS97 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS97 - MADS-box family gene with M-beta type-box |
| Structural Annotation: |
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|
LOC_Os01g68560 |
| Gene Name: |
OsMADS98 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS98 - MADS-box family gene with M-beta type-box, expressed |
| Structural Annotation: |
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|
LOC_Os01g69850 |
| Gene Name: |
OsMADS65 |
| Gene Description: |
MADS-box family gene with MIKC* type-box
|
| MSU Annotation: |
OsMADS65 - MADS-box family gene with MIKC* type-box, expressed |
| Comment: |
AK066160 |
| Structural Annotation: |
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|
LOC_Os01g74440 |
| Gene Name: |
OsMADS79 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS79 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
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|
LOC_Os02g01360 |
| Gene Name: |
OsMADS60 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS60 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK060830, AK121824 |
| Structural Annotation: |
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LOC_Os02g06860 |
| Gene Name: |
OsMADS80 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS80 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
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LOC_Os02g07430 |
| Gene Name: |
OsMADS29 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS29 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK109522 |
| Structural Annotation: |
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LOC_Os02g36924 |
| Gene Name: |
OsMADS27 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS27 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
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LOC_Os02g45770 |
| Gene Name: |
OsMADS6 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS6 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK069103 |
| Structural Annotation: |
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LOC_Os02g49840 |
| Gene Name: |
OsMADS57 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS57 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK108784 |
| Structural Annotation: |
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LOC_Os02g52340 |
| Gene Name: |
OsMADS22 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS22 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070121 |
| Structural Annotation: |
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LOC_Os03g03100 |
| Gene Name: |
OsMADS50 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS50 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK067641, AK104921 |
| Structural Annotation: |
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LOC_Os03g08754 |
| Gene Name: |
OsMADS47 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS47 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
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LOC_Os03g11614 |
| Gene Name: |
OsMADS1 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS1 - MADS-box family gene with MIKCc type-box, expressed |
| Mutant Line/Info: |
lhs1 (leafy hull sterile 1) |
| Comment: |
AK070981, AK069728 |
| Structural Annotation: |
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LOC_Os03g14850 |
| Gene Name: |
OsMADS72 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
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| MSU Annotation: |
OsMADS72 - MADS-box family gene with M-alpha type-box, expressed |
| Structural Annotation: |
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LOC_Os03g37670 |
| Gene Name: |
OsMADS86 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS86 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os03g38610 |
| Gene Name: |
OsMADS87 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
|
| MSU Annotation: |
OsMADS87 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os03g54160 |
| Gene Name: |
OsMADS14 |
| Alternate Gene Name: |
RAP1B, FDRMADS6
|
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS14 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK121171 |
| Structural Annotation: |
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LOC_Os03g54170 |
| Gene Name: |
OsMADS34 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS34 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK100227 |
| Structural Annotation: |
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LOC_Os04g23910 |
| Gene Name: |
OsMADS25 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS25 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK102927 |
| Structural Annotation: |
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LOC_Os04g24790 |
| Gene Name: |
OsMADS81 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS81 - MADS-box family gene with M-gamma type-box, expressed |
| Structural Annotation: |
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LOC_Os04g24800 |
| Gene Name: |
OsMADS82 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS82 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os04g24810 |
| Gene Name: |
OsMADS83 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS83 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os04g25870 |
| Gene Name: |
OsMADS84 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS84 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os04g25920 |
| Gene Name: |
OsMADS85 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS85 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os04g25930 |
| Gene Name: |
OsMADS99 |
| Gene Description: |
MADS-box family gene with M-gamma type-box
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| MSU Annotation: |
OsMADS99 - MADS-box family gene with M-gamma type-box |
| Structural Annotation: |
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LOC_Os04g31804 |
| Gene Name: |
OsMADS64 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
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| MSU Annotation: |
OsMADS64 - MADS-box family gene with M-alpha type-box, expressed |
| Structural Annotation: |
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LOC_Os04g38770 |
| Gene Name: |
OsMADS61 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS61 - MADS-box family gene with MIKCc type-box |
| Structural Annotation: |
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LOC_Os04g49150 |
| Gene Name: |
OsMADS17 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS17 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070540 |
| Structural Annotation: |
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LOC_Os04g52410 |
| Gene Name: |
OsMADS31 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS31 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
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LOC_Os05g11380 |
| Gene Name: |
OsMADS66 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS66 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
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LOC_Os05g11414 |
| Gene Name: |
OsMADS58 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS58 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK111723 |
| Structural Annotation: |
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LOC_Os05g23780 |
| Gene Name: |
OsMADS70 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS70 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
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LOC_Os05g34940 |
| Gene Name: |
OsMADS4 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS4 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK100233 |
| Structural Annotation: |
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LOC_Os06g06750 |
| Gene Name: |
OsMADS5 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS5 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK064184 |
| Structural Annotation: |
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LOC_Os06g11330 |
| Gene Name: |
OsMADS55 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS55 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK111859 |
| Structural Annotation: |
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LOC_Os06g11970 |
| Gene Name: |
OsMADS63 |
| Gene Description: |
MADS-box family gene with MIKC* type-box
|
| MSU Annotation: |
OsMADS63 - MADS-box family gene with MIKC* type-box, expressed |
| Comment: |
AK111776 |
| Structural Annotation: |
|
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LOC_Os06g22760 |
| Gene Name: |
OsMADS71 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS71 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
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LOC_Os06g23950 |
| Gene Name: |
OsMADS59 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS59 - MADS-box family gene with MIKCc type-box |
| Structural Annotation: |
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LOC_Os06g30810 |
| Gene Name: |
OsMADS75 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS75 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
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LOC_Os06g30830 |
| Gene Name: |
OsMADS76 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS76 - MADS-box family gene with M-alpha type-box, expressed |
| Structural Annotation: |
|
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LOC_Os06g45650 |
| Gene Name: |
OsMADS30 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS30 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
|
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LOC_Os06g49840 |
| Gene Name: |
OsMADS16 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS16 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK069317 |
| Structural Annotation: |
|
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LOC_Os07g01820 |
| Gene Name: |
OsMADS15 |
| Alternate Gene Name: |
RAP1A
|
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS15 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK072683 |
| Structural Annotation: |
|
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LOC_Os07g04170 |
| Gene Name: |
OsMADS90 |
| Gene Description: |
MADS-box family gene with M-beta type-box
|
| MSU Annotation: |
OsMADS90 - MADS-box family gene with M-beta type-box, expressed |
| Structural Annotation: |
|
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LOC_Os07g41370 |
| Gene Name: |
OsMADS18 |
| Alternate Gene Name: |
OsMADS28, FDRMADS7
|
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS18 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK064704 |
| Structural Annotation: |
|
|
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LOC_Os08g02070 |
| Gene Name: |
OsMADS26 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS26 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK069122 |
| Structural Annotation: |
|
|
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LOC_Os08g20440 |
| Gene Name: |
OsMADS69 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS69 - MADS-box family gene with M-alpha type-box, expressed |
| Comment: |
NM_001068023 |
| Structural Annotation: |
|
|
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| |
|
LOC_Os08g33488 |
| Gene Name: |
OsMADS23 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS23 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
|
|
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|
LOC_Os08g38590 |
| Gene Name: |
OsMADS62 |
| Gene Description: |
MADS-box family gene with MIKC* type-box
|
| MSU Annotation: |
OsMADS62 - MADS-box family gene with MIKC* type-box, expressed |
| Structural Annotation: |
|
|
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|
LOC_Os08g41950 |
| Gene Name: |
OsMADS7 |
| Alternate Gene Name: |
OsMADS45
|
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS7 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK100263 |
| Structural Annotation: |
|
|
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| |
|
LOC_Os08g41960 |
| Gene Name: |
OsMADS37 |
| Gene Description: |
MADS-box family gene with MIKC* type-box
|
| MSU Annotation: |
OsMADS37 - MADS-box family gene with MIKC* type-box, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os09g02780 |
| Gene Name: |
OsMADS77 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS77 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os09g02830 |
| Gene Name: |
OsMADS78 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
|
| MSU Annotation: |
OsMADS78 - MADS-box family gene with M-alpha type-box |
| Structural Annotation: |
|
|
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LOC_Os09g32948 |
| Gene Name: |
OsMADS8 |
| Alternate Gene Name: |
OsMADS24
|
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS8 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK072867 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os10g39130 |
| Gene Name: |
OsMADS56 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS56 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070135 |
| Structural Annotation: |
|
|
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| |
|
LOC_Os11g43740 |
| Gene Name: |
OsMADS68 |
| Gene Description: |
MADS-box family gene with MIKC* type-box
|
| MSU Annotation: |
OsMADS68 - MADS-box family gene with MIKC* type-box, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g10520 |
| Gene Name: |
OsMADS33 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS33 - MADS-box family gene with MIKCc type-box, expressed |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g10540 |
| Gene Name: |
OsMADS13 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
|
| MSU Annotation: |
OsMADS13 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AK070425 |
| Structural Annotation: |
|
|
|
| |
|
LOC_Os12g21850 |
| Gene Name: |
OsMADS73 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
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| MSU Annotation: |
OsMADS73 - MADS-box family gene with M-alpha type-box, expressed |
| Structural Annotation: |
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LOC_Os12g21880 |
| Gene Name: |
OsMADS74 |
| Gene Description: |
MADS-box family gene with M-alpha type-box
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| MSU Annotation: |
OsMADS74 - MADS-box family gene with M-alpha type-box, expressed |
| Structural Annotation: |
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LOC_Os12g31748 |
| Gene Name: |
OsMADS20 |
| Gene Description: |
MADS-box family gene with MIKCc type-box
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| MSU Annotation: |
OsMADS20 - MADS-box family gene with MIKCc type-box, expressed |
| Comment: |
AAO92341, AY250075 |
| Structural Annotation: |
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