Rice Genome Annotation Project Rice Genome Browser

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Rice Genome Annotation Project - MSU Rice Genome Annotation (Osa1) Release 7

Showing 31.5 kbp from Chr1, positions 1 to 31,495

Instructions Instructions Searching: Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed. Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position. Examples: Chr1:1..20000, Chr5:1464000..1480000, LOC_Os08g40150, LOC_Os02g06840.2.
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Instructions

Searching: Search using a sequence name, gene name, locus, or other landmark. The wildcard character * is allowed.
Navigation: Click one of the rulers to center on a location, or click and drag to select a region. Use the Scroll/Zoom buttons to change magnification and position.

Examples: Chr1:1..20000, Chr5:1464000..1480000, LOC_Os08g40150, LOC_Os02g06840.2.

[Bookmark this] [Upload your own data] [Hide banner] [Share these tracks] [Link to Image] [High-res Image] [Help] [Reset]

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Landmark or Region:	Reports & Analysis:
Data Source Rice Genome Annotation Project Rice Genome Browser - Release 7	Scroll/Zoom: Flip

Overview

Region

Gene Overview Landmarks:region region

Details

MSU Osa1 Rice Loci Genes detail

MSU Osa1 Rice Gene Models Rice_Annotation detail

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Tracks

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Generic genome browser version 1.70

Affymetrix GeneChip Rice Genome Array	MPSS Tags	NSF 45k Rice Oligo Microarray
Agilent Rice Oligo Microarray	NSF 20k Rice Oligo Microarray	SAGE Tags

CSRDB smRNAs	MULEs and Transduplications (McGill)	Oryza Repeats	Rice BAC Tiling Path
Flanking Sequence Tags (FSTs)	Noncoding RNAs	Pack MULES (MSU)
miRBase Oryza miRNAs	Organellar Insertions	Predotar Predictions

Best Arabidopsis Hit	Best Maize Hit	Interpro Protein Domain Alignments	Orthologous Groups - Sequenced Genomes
Best Brachypodium Hit	Best Sorghum Hit	Orthologous Groups - Poaceae	UniRef100 BLASTP Hits

Anther	Leaves-20 days	Pre-emergence inflorescence	Seedling 4-leaf - F1 93-11/Nipp
Embryo-25 days after pollination	Leaves-20 days (replicate)	Seed-10 days after pollination	Seedling 4-leaf - F1 Nipp/93-11
Endosperm-25 days after pollination	Pistil	Seed-5 days after pollination	Seedling 4-leaf - Nipponbare
Endosperm-25 days after pollination (replicate)	Post-emergence inflorescence	Seedling 4-leaf - 93-11	Shoots

MSU Osa1 Rice Gene Models	RAP-DB Predicted Rice Gene Models	rRNA Loci
MSU Osa1 Rice Loci	RAP-DB Representative Rice Gene Models	tRNA Predictions

Agrostis stolonifera PlantGDB PUTs	Elymus PlantGDB PUTs	Oryza sativa PlantGDB PUTs	Secale cereale PlantGDB PUTs
Avena PlantGDB PUTs	Eragrostis curvula PlantGDB PUTs	Panicum virgatum PlantGDB PUTs	Sorghum PlantGDB PUTs
Brachypodium distachyon PlantGDB PUTs	Festuca PlantGDB PUTs	Phyllostachys edulis PlantGDB PUTs	Triticum PlantGDB PUTs
Cenchrus ciliaris PlantGDB PUTs	Hordeum vulgare PlantGDB PUTs	Pseudoroegneria spicata PlantGDB PUTs	Zea mays PlantGDB PUTs
Cynodon dactylon PlantGDB PUTs	Leymus cinereus x Leymus triticoides PlantGDB PUTs	Rice ESTs
Dactylis glomerata PlantGDB PUTs	Lolium perenne PlantGDB PUTs	Rice FL-cDNA
Eleusine coracana PlantGDB PUTs	Oryza longistaminata PlantGDB PUTs	Saccharum PlantGDB PUTs

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Cache tracks	Track Name Table Alphabetic Varying	Highlight regions (region1:start..end region2:start..end)
Draggable tracks	Key position Between Beneath Left Right	Region Size (bp)
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