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Rice Gene Expression Anatomy Viewer and Digital Northern
 

This page will return the gene expression evidence for rice loci based on EST data. The EST evidence was determined using the PASA program which utilizes a number of alignment programs to maximally align transcripts to the genome. The minimal alignment allowed by the PASA program is 95% identity over 90% length of the transcript.

Two outputs are provided for the EST Based expression display: the Anatomy Viewer and Digital Northern. The Anatomy Viewer provides graphical views of expression based on tissues while the Digital Northern is a tabular format for the data based on EST library.

Enter a list of identifiers (e.g. LOC_Os02g13300, 13101.t00001, 13101.m00001 ) in the text area below:


  

OR

Enter the name of the file containing a list of identifiers (e.g. LOC_Os02g13300, 13101.t00001, 13101.m00001):

 
   
 
For Rice Comments/Questions send mail to the MSU Rice Genome Annotation Project team.
 
Photographs courtesy of Robin Buell (MSU), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service