Matched Pfam Domains and Prosite Sequences

Rice Matched Pfam Domains and Interpro Protein families, Domains and Functional Sites

Matched Pfam Domains

Provided below are three methods to search for matched Pfam domains in proteins from the Rice Genome Annotation Project Database.

Enter either a Pfam profile or Pfam domain key word(s) to select genes containing Pfam domains from the Rice Genome Annotation Project Database. The search is case insensitive. Otherwise, you can view the Pfam domain matches for a model by entering the Locus Indentifier.

Examples:	Input PF00069 in Pfam profile text box or
	"Protein kinase domain" in text search box
	to find all genes containing protein kinase domain(s) in the Rice Genome Annotation Project Database.

Pfam profile:			or
Search text:



Otherwise, you can view the Pfam domain matches for a gene model by entering a Locus Indentifier (LOC_Os01g01010, LOC_Os11g47438.1 ):

Locus:

Click here to find more information on Pfam domains.

Matched Interpro Protein Families, Domains and Functional Sites

To search for Interpro Databse Matches in proteins from Rice Genome Annotation Project database select the chromosome you wish to view and the Interpro Database/Method

Click here to find more information on Interpro.

For Rice Comments/Questions send mail to the MSU Rice Genome Annotation Project team.

Photographs courtesy of Robin Buell (MSU), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service