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Orthologous Groups among Rice, Arabidopsis, Poplar, Grapevine, and Sorghum
 

A total of 177,841 protein coding genes from rice* (release 6.1), Arabidopsis (release 8), poplar (release 1.1), grapevine (release 1), and sorghum (release 1.4) were used for identification of putative orthologous groups using OrthoMCL with default parameters (Li et al., 2003). A total of 24,851 putative orthologous groups including in-paralogs were identified. Each putative orthologous group can be retrieved by searching rice locus identifier (e.g., LOC_Os09g39670), Arabidopsis gene identifier (e.g., AT4G23430), poplar gene identifier (e.g., eugene3.00121084 or gw1.XV.3431.1), grapevine gene identifier (e.g., GSVIVG00000434001), or sorghum gene identifier (e.g. Sb03g009160).

*: Transposable-element related genes, small gene models (< 50 amino acids ), organellar inserted genes, and pseudogenes were excluded from this analysis.


The list of orthologous groups can be downloaded here.


Rice locus to search (e.g., LOC_Os09g39670):

Arabidopsis gene to search (e.g., AT4G23430):

Poplar gene to search (e.g., eugene3.00121084 or gw1.XV.3431.1):

Grapevine gene to search (e.g., GSVIVG00000434001):

Sorghum locus to search (e.g., Sb03g009160):

 
   
 
For Rice Comments/Questions send mail to the MSU Rice Genome Annotation Project team.
 
Photographs courtesy of Robin Buell (MSU), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service