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Pack-MULE Related Loci
 

Pack-MULEs were identified on chromosome 1 and 10 as reported by Jiang et al. (Nature 431, 569 - 573, 2004). ID is an identifier to distinguish the Pack-MULEs. Family of Pack-MULE was obtained by Jiang et al. (2004). Location is the chromosome and coordinates to which the Pack-MULE maps in our pseudomolecules.

ID Family Location Locus Description
1 Os0222 Chr1:53449-54959 LOC_Os01g01110 conserved hypothetical protein
2 Os0037 Chr1:216127-217964 LOC_Os01g01440 hypothetical protein
3 Os0805 Chr1:289375-291185 LOC_Os01g01580 expressed protein
LOC_Os01g01590 expressed protein
4 Os1224 Chr1:400451-401913 LOC_Os01g01760 conserved hypothetical protein
5 Os0037 Chr1:492519-494268 LOC_Os01g01910 hypothetical protein
6 Os0949 Chr1:866849-867861 LOC_Os01g02610 protein kinase domain containing protein
7 Os0053 Chr1:1248374-1249651 NA NA
8 Os0874 Chr1:1765841-1766505 NA NA
9 Os0023 Chr1:1872416-1877740 LOC_Os01g04250 expressed protein
10 Os0037 Chr1:1923158-1924578 LOC_Os01g04320 transposon protein, putative, unclassified
11 Os0598 Chr1:2035554-2037234 NA NA
12 Os0053 Chr1:2147379-2148257 NA NA
13 Os0023 Chr1:2480423-2481902 NA NA
14 Os0023 Chr1:2627585-2629228 NA NA
15 Os0601 Chr1:2647866-2649245 LOC_Os01g05550 hypothetical protein
16 Os1224 Chr1:3193274-3194750 LOC_Os01g06750 verticillium wilt disease resistance protein precursor, putative
17 Os0974 Chr1:3426631-3428298 LOC_Os01g07270 transposon protein, putative, unclassified
18 Os1203 Chr1:3525335-3526049 LOC_Os01g07439 hypothetical protein
19 Os0598 Chr1:3593073-3594606 NA NA
20 Os0037 Chr1:3741445-3742893 NA NA
21 Os0229 Chr1:3897432-3899010 LOC_Os01g08050 hypothetical protein
22 Os0023 Chr1:4273334-4276875 LOC_Os01g08590 hypothetical protein
23 Os0974 Chr1:4280531-4285866 LOC_Os01g08610 protein dimerization, putative
24 Os0949 Chr1:4518963-4520287 NA NA
25 Os0974 Chr1:4720638-4722451 LOC_Os01g09290 transposon protein, putative, unclassified, expressed
26 Os0486 Chr1:4754894-4756324 LOC_Os01g09350 hypothetical protein
27 Os0954 Chr1:4756473-4757782 LOC_Os01g09360 hypothetical protein
28 Os0037 Chr1:4804531-4806364 LOC_Os01g09440 conserved hypothetical protein
29 Os0116 Chr1:4954280-4955128 NA NA
30 Os2318 Chr1:5140204-5141605 NA NA
31 Os0166 Chr1:5229713-5231053 NA NA
32 Os0023 Chr1:5394109-5396139 NA NA
33 Os0598 Chr1:5400044-5401767 LOC_Os01g10270 hypothetical protein
34 Os0023 Chr1:5799868-5804665 NA NA
35 Os0805 Chr1:5829952-5831632 LOC_Os01g10940 S-adenosylmethionine synthetase 1, putative
36 Os0250 Chr1:5852086-5853067 NA NA
37 Os0598 Chr1:5861743-5863577 LOC_Os01g11000 transposon protein, putative, unclassified
38 Os0037 Chr1:5863672-5865491 LOC_Os01g11000 transposon protein, putative, unclassified
39 Os0037 Chr1:5880511-5881812 LOC_Os01g11020 conserved hypothetical protein
40 Os0661 Chr1:6177887-6179570 LOC_Os01g11470 hypothetical protein
41 Os0023 Chr1:6303150-6304498 LOC_Os01g11700 esterase precursor, putative, expressed
42 Os0169 Chr1:6312451-6313420 NA NA
43 Os0037 Chr1:6363916-6365636 LOC_Os01g11770 hypothetical protein
LOC_Os01g11760 GDSL-like Lipase/Acylhydrolase family protein, expressed
44 Os0037 Chr1:6365680-6367480 LOC_Os01g11780 conserved hypothetical protein
45 Os0661 Chr1:6613186-6615156 LOC_Os01g12150 hypothetical protein
46 Os0486 Chr1:6642206-6643625 NA NA
47 Os0053 Chr1:6718750-6720174 LOC_Os01g12310 histone deacetylase, putative
48 Os0949 Chr1:6940034-6941448 NA NA
49 Os0486 Chr1:7211521-7213085 LOC_Os01g12990 hypothetical protein
50 Os0037 Chr1:7259374-7261171 LOC_Os01g13050 hypothetical protein
51 Os0105 Chr1:7296345-7297698 NA NA
52 Os0598 Chr1:7395636-7396805 NA NA
53 Os1104 Chr1:7452088-7452947 LOC_Os01g13380 hypothetical protein
54 Os0486 Chr1:7521831-7523353 NA NA
55 Os0598 Chr1:7523675-7525018 NA NA
56 Os0037 Chr1:7653734-7655937 LOC_Os01g13670 hypothetical protein
57 Os0166 Chr1:7657343-7658964 LOC_Os01g13680 hypothetical protein
58 Os0486 Chr1:7707114-7708969 NA NA
59 Os1255 Chr1:7792558-7793645 LOC_Os01g13920 conserved hypothetical protein
60 Os0166 Chr1:7867411-7869844 LOC_Os01g14060 hypothetical protein
61 Os0949 Chr1:8037495-8039237 LOC_Os01g14360 hypothetical protein
62 Os0954 Chr1:8197250-8198565 NA NA
63 Os0037 Chr1:8239935-8241273 NA NA
64 Os0250 Chr1:8554152-8555434 NA NA
65 Os0624 Chr1:8581399-8582556 LOC_Os01g15330 hypothetical protein
66 Os023 Chr1:8638632-8653749 LOC_Os01g15429 hypothetical protein
LOC_Os01g15438 hypothetical protein
67 Os0256 Chr1:8666098-8666850 NA NA
68 Os3239 Chr1:8670435-8671585 NA NA
69 Os0037 Chr1:8711293-8714202 LOC_Os01g15510 hypothetical protein
LOC_Os01g15500 conserved hypothetical protein
70 Os0624 Chr1:8955740-8957082 LOC_Os01g15910 UTP--glucose-1-phosphate uridylyltransferase family protein
71 Os0166 Chr1:9331033-9332493 LOC_Os01g16440 hypothetical protein
72 Os0037 Chr1:9341366-9343065 LOC_Os01g16460 hypothetical protein
73 Os0222 Chr1:9950685-9952535 LOC_Os01g17300 hypothetical protein
74 Os0037 Chr1:10207972-10209661 LOC_Os01g18230 FAD-linked oxidoreductase BG60, putative, expressed
75 Os0166 Chr1:10237645-10239075 NA NA
76 Os0023 Chr1:10259398-10261145 LOC_Os01g18280 SNF7 family protein, expressed
77 Os0166 Chr1:10300040-10301535 LOC_Os01g18340 conserved hypothetical protein
78 Os0037 Chr1:10355527-10356449 NA NA
79 Os0949 Chr1:10393311-10394659 NA NA
80 Os0023 Chr1:10433058-10434524 NA NA
81 Os0053 Chr1:10545382-10546483 LOC_Os01g18710 hypothetical protein
82 Os0166 Chr1:10634523-10635957 NA NA
83 Os0949 Chr1:10637128-10638588 LOC_Os01g18830 hypothetical protein
84 Os0486 Chr1:10981256-10982628 NA NA
85 Os0053 Chr1:11067436-11068817 LOC_Os01g19500 hypothetical protein
86 Os0805 Chr1:11220542-11222253 LOC_Os01g19780 conserved hypothetical protein
87 Os0220 Chr1:11265600-11266674 NA NA
88 Os0105 Chr1:11345400-11346789 NA NA
89 Os0166 Chr1:11563398-11564744 LOC_Os01g20770 hypothetical protein
90 Os0037 Chr1:11573404-11574933 LOC_Os01g20800 hypothetical protein
91 Os0949 Chr1:11606087-11607558 LOC_Os01g20850 conserved hypothetical protein
92 Os0598 Chr1:11670048-11671844 LOC_Os01g20920 hypothetical protein
LOC_Os01g20930 RING-H2 finger protein ATL3F, putative, expressed
93 Os0166 Chr1:11719978-11721234 LOC_Os01g21020 hypothetical protein
94 Os0598 Chr1:11734550-11736134 LOC_Os01g21050 tetratricopeptide-like helical, putative
95 Os0166 Chr1:11756572-11757836 LOC_Os01g21100 expressed protein
96 Os0166 Chr1:11779767-11782596 NA NA
97 Os0166 Chr1:11779890-11781310 NA NA
98 Os0166 Chr1:11865254-11867009 LOC_Os01g21280 conserved hypothetical protein
99 Os0598 Chr1:11899425-11900654 LOC_Os01g21340 hypothetical protein
100 Os0598 Chr1:11951152-11953046 LOC_Os01g21430 hypothetical protein
101 Os1121 Chr1:12094778-12096343 LOC_Os01g21620 conserved hypothetical protein
102 Os0053 Chr1:12495085-12496354 LOC_Os01g22249 peroxidase 1 precursor, putative, expressed
103 Os0256 Chr1:12743450-12744585 NA NA
104 Os1121 Chr1:12841087-12842367 LOC_Os01g22880 hypothetical protein
105 Os0166 Chr1:12927918-12929094 LOC_Os01g23010 hypothetical protein
106 Os0486 Chr1:13309590-13311141 LOC_Os01g23690 hypothetical protein
107 Os0037 Chr1:13426337-13427755 LOC_Os01g23890 hypothetical protein
108 Os0250 Chr1:13755858-13756758 NA NA
109 Os0116 Chr1:13840339-13841502 LOC_Os01g24590 hypothetical protein
110 Os0037 Chr1:13893684-13895534 LOC_Os01g24720 hypothetical protein
111 Os0661 Chr1:13896320-13899210 LOC_Os01g24730 hypothetical protein
LOC_Os01g24740 antioxidant, putative
112 Os1272 Chr1:14243003-14243978 LOC_Os01g25250 hypothetical protein
113 Os0116 Chr1:14767942-14768863 LOC_Os01g26090 hypothetical protein
114 Os0037 Chr1:14864874-14866495 LOC_Os01g26250 conserved hypothetical protein
115 Os0949 Chr1:14970169-14971216 LOC_Os01g26410 hypothetical protein
116 Os0446 Chr1:15095242-15096403 LOC_Os01g26788 wall-associated kinase 1, putative
117 Os0598 Chr1:15123893-15125061 NA NA
118 Os0053 Chr1:15258116-15259388 LOC_Os01g26876 disulfide oxidoreductase/ monooxygenase/ oxidoreductase, putative, expressed
119 Os0624 Chr1:15266208-15267480 NA NA
120 Os0166 Chr1:15336119-15338756 LOC_Os01g26940 RNA binding protein, putative, expressed
121 Os0037 Chr1:15517751-15518827 NA NA
122 Os0053 Chr1:15902946-15903927 NA NA
123 Os0219 Chr1:16062904-16064337 NA NA
124 Os0954 Chr1:17449938-17451551 LOC_Os01g31300 retrotransposon protein, putative, unclassified
125 Os0037 Chr1:17461434-17462871 LOC_Os01g31310 hypothetical protein
126 Os0037 Chr1:17578039-17579856 LOC_Os01g31540 retrotransposon protein, putative, Ty1-copia subclass
127 Os0219 Chr1:17831626-17833530 LOC_Os01g31980 transparent testa 12 protein, putative, expressed
128 Os0037 Chr1:18196997-18199640 LOC_Os01g32574 transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g32590 transposon protein, putative, CACTA, En/Spm sub-class
129 Os0601 Chr1:18420339-18421570 LOC_Os01g32964 protein phosphatase 2C ABI2, putative, expressed
130 Os0949 Chr1:18599904-18601341 LOC_Os01g33190 transposon protein, putative, CACTA, En/Spm sub-class
131 Os0053 Chr1:18975442-18976536 NA NA
132 Os0166 Chr1:18982393-18984909 NA NA
133 Os0486 Chr1:19063799-19065358 LOC_Os01g34040 retrotransposon protein, putative, unclassified
134 Os0949 Chr1:19304389-19305869 LOC_Os01g34420 expressed protein
135 Os2178 Chr1:19343611-19344904 LOC_Os01g34490 retrotransposon protein, putative, unclassified
136 Os0709 Chr1:19355513-19356413 NA NA
137 Os1121 Chr1:19933750-19935276 NA NA
138 Os0208 Chr1:20271677-20273170 LOC_Os01g36040 retrotransposon protein, putative, Ty3-gypsy subclass
139 Os0974 Chr1:20300696-20301794 NA NA
140 Os0598 Chr1:20353703-20354965 NA NA
141 Os0949 Chr1:20587259-20588699 LOC_Os01g36500 protein kinase domain containing protein, expressed
142 Os0949 Chr1:20935302-20936788 NA NA
143 Os0037 Chr1:20936829-20937875 NA NA
144 Os3282 Chr1:21026596-21034741 LOC_Os01g37090 expressed protein
LOC_Os01g37100 RWP-RK domain containing protein, expressed
145 Os0037 Chr1:21088670-21092060 NA NA
146 Os0610 Chr1:21285906-21286970 NA NA
147 Os0053 Chr1:21340005-21341505 LOC_Os01g37580 retrotransposon protein, putative, unclassified
148 Os0053 Chr1:21398177-21399235 LOC_Os01g37690 vacuolar cation/proton exchanger 1a, putative, expressed
149 Os1255 Chr1:21654971-21656231 LOC_Os01g38070 retrotransposon protein, putative, unclassified
150 Os0166 Chr1:21734512-21735871 NA NA
151 Os0053 Chr1:21828827-21830076 NA NA
152 Os0974 Chr1:22089485-22091219 LOC_Os01g38790 transposon protein, putative, CACTA, En/Spm sub-class
153 Os0037 Chr1:22233284-22234902 NA NA
154 Os0053 Chr1:22249573-22259585 LOC_Os01g39000 expressed protein
155 Os3295 Chr1:22374885-22376188 LOC_Os01g39190 retrotransposon protein, putative, unclassified
156 Os1545 Chr1:22396861-22397858 NA NA
157 Os0949 Chr1:22513271-22514383 NA NA
158 Os0486 Chr1:22645251-22646959 LOC_Os01g39570 retrotransposon protein, putative, Ty3-gypsy subclass
159 Os1402 Chr1:22660442-22661120 NA NA
160 Os0166 Chr1:22716715-22717792 NA NA
161 Os0598 Chr1:23150649-23152215 LOC_Os01g40430 OsWRKY27 - Superfamily of rice TFs having WRKY and zinc finger domains, expressed
162 Os0166 Chr1:23193562-23195918 LOC_Os01g40480 phosphoribosylanthranilate transferase, 3 partial, putative, expressed
163 Os0486 Chr1:23259127-23260625 LOC_Os01g40610 coiled-coil domain-containing protein 94, putative, expressed
164 Os0954 Chr1:23269044-23270845 NA NA
165 Os0949 Chr1:23293777-23295088 NA NA
166 Os0949 Chr1:23429681-23431578 LOC_Os01g40860 retinal dehydrogenase 1, putative, expressed
167 Os1129 Chr1:23616688-23617594 NA NA
168 Os0037 Chr1:23762277-23763904 NA NA
169 Os0601 Chr1:23785554-23786551 NA NA
170 Os0513 Chr1:23792704-23794505 NA NA
171 Os0949 Chr1:23870971-23872437 LOC_Os01g41580 transposon protein, putative, Mutator sub-class
172 Os0166 Chr1:23881472-23888339 LOC_Os01g41610 hydrogen-transporting ATP synthase, rotational mechanism, putative, expressed
173 Os0486 Chr1:24020603-24022369 NA NA
174 Os0601 Chr1:24082582-24084054 NA NA
175 Os0297 Chr1:24164786-24166233 LOC_Os01g42030 mitochondrial chaperone BCS1, putative, expressed
176 Os0053 Chr1:24304717-24305796 LOC_Os01g42294 atypical receptor-like kinase MARK, putative, expressed
177 Os0486 Chr1:24340382-24342132 NA NA
178 Os0949 Chr1:24533884-24535677 NA NA
179 Os0053 Chr1:24626479-24627790 LOC_Os01g42720 expressed protein
LOC_Os01g42710 LSD1 zinc finger family protein, expressed
180 Os0486 Chr1:24751515-24752802 LOC_Os01g42934 retrotransposon protein, putative, Ty1-copia subclass
181 Os0949 Chr1:24883552-24884905 NA NA
182 Os0661 Chr1:24957906-24959429 LOC_Os01g43160 polygalacturonase, putative, expressed
183 Os0037 Chr1:25006034-25007685 LOC_Os01g43210 retrotransposon protein, putative, Ty1-copia subclass
184 Os0169 Chr1:25109294-25110674 NA NA
185 Os3239 Chr1:25138755-25140002 LOC_Os01g43370 expressed protein
186 Os0610 Chr1:25542573-25543868 NA NA
187 Os0037 Chr1:25558730-25560706 LOC_Os01g44040 O-acetyltransferase, putative, expressed
188 Os0053 Chr1:25721145-25722138 NA NA
189 Os0037 Chr1:25912821-25914788 LOC_Os01g45070 peptide deformylase, chloroplast precursor, putative, expressed
190 Os0949 Chr1:26010629-26012153 NA NA
191 Os0037 Chr1:26022059-26023438 LOC_Os01g45274 carbonic anhydrase, chloroplast precursor, putative, expressed
192 Os0166 Chr1:26070868-26073171 LOC_Os01g45350 limonene cyclase like protein, putative, expressed
193 Os1272 Chr1:26156939-26157999 NA NA
194 Os0037 Chr1:26305613-26307088 LOC_Os01g45750 bile acid sodium symporter/ transporter, putative, expressed
195 Os0954 Chr1:26368850-26370248 LOC_Os01g45850 conserved hypothetical protein
196 Os0037 Chr1:26392339-26393553 LOC_Os01g45880 retrotransposon protein, putative, unclassified, expressed
197 Os0598 Chr1:26397679-26399183 LOC_Os01g45890 hypothetical protein
LOC_Os01g45880 retrotransposon protein, putative, unclassified, expressed
198 Os0486 Chr1:26688091-26689841 NA NA
199 Os0037 Chr1:26742287-26743794 LOC_Os01g46410 expressed protein
200 Os0250 Chr1:27056961-27058008 NA NA
201 Os0610 Chr1:27443638-27444799 LOC_Os01g47450 carboxyl-terminal-processing protease precursor, putative, expressed
202 Os0598 Chr1:27507039-27508210 LOC_Os01g47540 CTD-phosphatase-like protein, putative, expressed
203 Os0949 Chr1:27550372-27551618 NA NA
204 Os0378 Chr1:27575552-27576687 NA NA
205 Os0949 Chr1:27783602-27792678 LOC_Os01g47980 retrotransposon protein, putative, unclassified
206 Os0974 Chr1:27834762-27836284 NA NA
207 Os0037 Chr1:28226039-28227582 LOC_Os01g48660 expressed protein
LOC_Os01g48670 retrotransposon protein, putative, Ty1-copia subclass
208 Os0037 Chr1:28313328-28314316 LOC_Os01g48790 YT521-B-like family protein, expressed
209 Os0037 Chr1:28316689-28323568 LOC_Os01g48800 ATPUP11, putative, expressed
LOC_Os01g48790 YT521-B-like family protein, expressed
210 Os0053 Chr1:28423716-28425043 LOC_Os01g48960 glutamate synthase, chloroplast precursor, putative, expressed
211 Os0949 Chr1:28484107-28489605 LOC_Os01g49010 origin recognition complex subunit 4, putative, expressed
212 Os0023 Chr1:28630689-28632187 LOC_Os01g49230 limonoid UDP-glucosyltransferase, putative, expressed
213 Os0037 Chr1:28833102-28844809 LOC_Os01g49570 hypothetical protein
LOC_Os01g49580 protein kinase domain containing protein, expressed
214 Os0037 Chr1:28893985-28896077 LOC_Os01g49710 glutathione S-transferase GSTU6, putative, expressed
LOC_Os01g49720 glutathione S-transferase GSTU6, putative, expressed
215 Os0023 Chr1:28932682-28934254 LOC_Os01g49820 lipid phosphate phosphatase 3, chloroplast precursor, putative, expressed
216 Os0624 Chr1:29126151-29128212 LOC_Os01g50120 expressed protein
217 Os0037 Chr1:29150715-29152184 NA NA
218 Os0624 Chr1:29157309-29163195 LOC_Os01g50160 multidrug resistance protein 8, putative, expressed
LOC_Os01g50170 aspartic proteinase nepenthesin-1 precursor, putative, expressed
219 Os0974 Chr1:29209606-29211073 LOC_Os01g50310 VIP1 protein, putative, expressed
220 Os0949 Chr1:29262636-29264177 NA NA
221 Os0166 Chr1:29603865-29605468 LOC_Os01g50950 hypothetical protein
222 Os0037 Chr1:29802259-29803652 LOC_Os01g51270 hypothetical protein
223 Os0166 Chr1:29820682-29821924 NA NA
224 Os0974 Chr1:30330013-30332209 LOC_Os01g52160 metal ion binding protein, putative, expressed
225 Os0037 Chr1:30564504-30566331 LOC_Os01g52600 hypothetical protein
226 Os0166 Chr1:30828241-30829867 LOC_Os01g53079 ubiquitin domain containing 1, putative, expressed
227 Os0023 Chr1:30835967-30838034 NA NA
228 Os0037 Chr1:30881652-30883186 LOC_Os01g53190 hypothetical protein
229 Os0023 Chr1:30918603-30923585 LOC_Os01g53250 NADPH reductase TAH18, putative, expressed
LOC_Os01g53240 dehydration-induced protein RD22-like protein 2, putative, expressed
230 Os0222 Chr1:30934777-30936554 LOC_Os01g53280 50S ribosomal protein L20, putative, expressed
LOC_Os01g53260 OsWRKY23 - Superfamily of rice TFs having WRKY and zinc finger domains, expressed
231 Os0513 Chr1:31014822-31016404 NA NA
232 Os0624 Chr1:31041573-31044390 LOC_Os01g53450 8-amino-7-oxononanoate synthase, putative, expressed
233 Os0037 Chr1:31260327-31261755 LOC_Os01g53810 transferrin receptor-like dimerisation domain containing protein, expressed
234 Os0037 Chr1:31613328-31615081 LOC_Os01g54380 HCF152, putative, expressed
LOC_Os01g54390 RNA-binding S4, putative, expressed
LOC_Os01g54370 dihydroorotase, mitochondrial precursor, putative, expressed
235 Os0166 Chr1:31671710-31672714 LOC_Os01g54490 protein TWIN SISTER of FT, putative
236 Os0037 Chr1:31703452-31705815 LOC_Os01g54560 trehalose synthase, putative, expressed
237 Os0949 Chr1:31743737-31745166 NA NA
238 Os0624 Chr1:31862956-31865416 LOC_Os01g54830 retrotransposon protein, putative, Ty3-gypsy subclass
239 Os0974 Chr1:32029432-32031116 NA NA
240 Os0954 Chr1:32062443-32064292 NA NA
241 Os2357 Chr1:32275237-32276683 LOC_Os01g55450 CBL-interacting serine/threonine-protein kinase 11, putative, expressed
242 Os1015 Chr1:32814114-32815500 LOC_Os01g56370 expressed protein
243 Os0169 Chr1:32958386-32959799 LOC_Os01g56590 HEAT repeat family protein, expressed
244 Os0037 Chr1:33006295-33007383 LOC_Os01g56640 expressed protein
245 Os0598 Chr1:33025974-33027356 LOC_Os01g56670 ER degradation-enhancing alpha-mannosidase-like 1, putative, expressed
246 Os0037 Chr1:33114928-33116421 LOC_Os01g56810 cytokinin dehydrogenase 5 precursor, putative, expressed
247 Os0513 Chr1:33204702-33206218 LOC_Os01g56910 expressed protein
248 Os0624 Chr1:33215554-33217611 LOC_Os01g56930 aspartic proteinase nepenthesin-2 precursor, putative, expressed
249 Os0954 Chr1:33318300-33319907 LOC_Os01g57082 insulin-degrading enzyme, putative
250 Os0169 Chr1:33325654-33327136 LOC_Os01g57100 protein kinase, putative, expressed
LOC_Os01g57110 ATP binding protein, putative, expressed
251 Os0037 Chr1:33618340-33619607 NA NA
252 Os0949 Chr1:33635018-33636442 LOC_Os01g57610 indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
253 Os0598 Chr1:33636510-33638375 LOC_Os01g57610 indole-3-acetic acid-amido synthetase GH3.1, putative, expressed
254 Os2318 Chr1:33859709-33860892 LOC_Os01g57974 retrotransposon protein, putative, unclassified
255 Os0166 Chr1:33991061-33996378 LOC_Os01g58260 peptidase/ subtilase, putative, expressed
256 Os0949 Chr1:34092382-34094228 LOC_Os01g58420 ethylene-responsive transcription factor 4, putative, expressed
257 Os0949 Chr1:34348571-34356296 LOC_Os01g58880 hypothetical protein
258 Os0166 Chr1:34481661-34483085 LOC_Os01g59130 expressed protein
259 Os0053 Chr1:34502367-34503498 LOC_Os01g59160 UBA/TS-N domain, putative, expressed
260 Os0105 Chr1:34766338-34767740 LOC_Os01g59560 protein kinase domain containing protein
261 Os0115 Chr1:34779922-34780514 LOC_Os01g59570 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed
262 Os0624 Chr1:35089932-35094217 NA NA
263 Os0037 Chr1:35118172-35119663 LOC_Os01g60140 ATCHX15, putative, expressed
264 Os0166 Chr1:35171709-35173167 LOC_Os01g60250 selenium-binding protein-like, putative, expressed
265 Os0166 Chr1:35406878-35408092 NA NA
266 Os0116 Chr1:35569739-35570563 NA NA
267 Os0037 Chr1:35572257-35575677 LOC_Os01g60930 expressed protein
LOC_Os01g60940 expressed protein
268 Os0974 Chr1:35708550-35711922 NA NA
269 Os0598 Chr1:35846039-35847488 LOC_Os01g61430 HIT zinc finger family protein, expressed
270 Os0037 Chr1:36005632-36007079 LOC_Os01g61660 retrotransposon protein, putative, unclassified
271 Os0037 Chr1:36209637-36211791 LOC_Os01g61990 protein binding protein, putative, expressed
272 Os0023 Chr1:36372535-36374154 LOC_Os01g62300 SLT1 protein, putative, expressed
273 Os0949 Chr1:36717462-36718542 NA NA
274 Os0037 Chr1:36782709-36784361 NA NA
275 Os0486 Chr1:36817503-36819152 NA NA
276 Os0598 Chr1:37227759-37229380 LOC_Os01g63630 retrotransposon protein, putative, Ty3-gypsy subclass
277 Os0037 Chr1:37260291-37280836 LOC_Os01g63670 hypothetical protein
LOC_Os01g63690 nematode-resistance protein, putative, expressed
LOC_Os01g63710 cell division control protein 6, putative, expressed
LOC_Os01g63680 myb-like DNA-binding domain containing protein, expressed
278 Os0222 Chr1:37301350-37303164 LOC_Os01g63740 transposon protein, putative, CACTA, En/Spm sub-class
279 Os0598 Chr1:37429343-37430964 NA NA
280 Os0974 Chr1:37508971-37510719 LOC_Os01g64020 transcription factor HBP-1b, putative, expressed
LOC_Os01g64010 dual specificity protein phosphatase Diacylglycerol kinase, catalytic region, putative, expressed
281 Os0105 Chr1:37590379-37591740 LOC_Os01g64160 transposon protein, putative, CACTA, En/Spm sub-class
282 Os0037 Chr1:37735151-37736985 NA NA
283 Os0601 Chr1:37737298-37739004 LOC_Os01g64460 hypothetical protein
LOC_Os01g64470 YLS9, putative, expressed
284 Os0601 Chr1:38042801-38043951 LOC_Os01g64980 ion channel DMI1, chloroplast precursor, putative, expressed
285 Os0949 Chr1:38072720-38074557 LOC_Os01g65030 S-locus-specific glycoprotein S13 precursor, putative, expressed
286 Os0805 Chr1:38111446-38112868 LOC_Os01g65094 expressed protein
287 Os0598 Chr1:38197494-38199522 NA NA
288 Os0037 Chr1:38199539-38200440 NA NA
289 Os0598 Chr1:38249113-38254748 LOC_Os01g65360 hypothetical protein
290 Os0974 Chr1:38507124-38509097 NA NA
291 Os0023 Chr1:38769494-38770972 LOC_Os01g66180 cytochrome c, putative, expressed
292 Os0037 Chr1:38772208-38773616 LOC_Os01g66180 cytochrome c, putative, expressed
293 Os2357 Chr1:38835852-38837347 LOC_Os01g66300 nucleic acid binding protein, putative, expressed
294 Os0166 Chr1:39565705-39567669 LOC_Os01g67510 DNA repair protein recA homolog 3, putative, expressed
295 Os1228 Chr1:39613711-39615238 NA NA
296 Os2357 Chr1:39725345-39740823 LOC_Os01g67780 hypothetical protein
LOC_Os01g67790 hypothetical protein
LOC_Os01g67800 retrotransposon protein, putative, unclassified
LOC_Os01g67810 exo70 exocyst complex subunit family protein, expressed
LOC_Os01g67820 exo70 exocyst complex subunit family protein, expressed
297 Os0974 Chr1:39740835-39742392 LOC_Os01g67830 B3 DNA binding domain containing protein, expressed
298 Os0166 Chr1:40585352-40586754 NA NA
299 Os0037 Chr1:40905924-40908182 NA NA
300 Os0037 Chr1:41330883-41332587 LOC_Os01g70850 esterase PIR7B, putative, expressed
301 Os0949 Chr1:41332721-41334286 LOC_Os01g70850 esterase PIR7B, putative, expressed
LOC_Os01g70860 esterase PIR7A, putative, expressed
302 Os0023 Chr1:41362197-41363955 NA NA
303 Os0023 Chr1:41536418-41538035 NA NA
304 Os0037 Chr1:41539284-41541079 NA NA
305 Os0105 Chr1:41573078-41574428 LOC_Os01g71280 glycerol-3-phosphate dehydrogenase, putative, expressed
306 Os0053 Chr1:41663685-41664715 NA NA
307 Os0624 Chr1:41668304-41670618 LOC_Os01g71330 expressed protein
308 Os0037 Chr1:41834560-41836038 NA NA
309 Os0598 Chr1:42139833-42141302 NA NA
310 Os0105 Chr1:42263537-42264930 NA NA
311 Os3295 Chr1:42351783-42353008 LOC_Os01g72480 zinc finger, C3HC4 type family protein, expressed
312 Os0208 Chr1:42381294-42382776 NA NA
313 Os0486 Chr1:42467296-42472051 LOC_Os01g72630 expressed protein
314 Os0037 Chr1:42538278-42539806 LOC_Os01g72760 cytochrome P450 71D10, putative, expressed
315 Os0624 Chr1:42539833-42541139 LOC_Os01g72760 cytochrome P450 71D10, putative, expressed
316 Os0949 Chr1:42736883-42738662 NA NA
317 Os0598 Chr1:42883695-42885146 LOC_Os01g73430 DNA-directed RNA polymerase alpha subunit, putative
318 Os0037 Chr1:43056266-43058054 NA NA
319 Os0037 Chr1:43086121-43088171 LOC_Os01g73820 hypothetical protein
320 Os0166 Chr10:260785-261920 NA NA
321 Os0166 Chr10:761104-762278 NA NA
322 Os0023 Chr10:824670-825877 LOC_Os10g02350 transmembrane 9 superfamily protein member 1 precursor, putative, expressed
323 Os0166 Chr10:909652-910928 LOC_Os10g02490 NAD(P)H-dependent oxidoreductase, putative, expressed
LOC_Os10g02500 serine/threonine-protein kinase BRI1-like 2 precursor, putative, expressed
324 Os0053 Chr10:982331-983006 LOC_Os10g02610 hypothetical protein
325 Os0974 Chr10:1434667-1436417 LOC_Os10g03400 CRAL/TRIO, N-terminus family protein, expressed
326 Os0222 Chr10:1565924-1566855 NA NA
327 Os0238 Chr10:1682521-1684108 NA NA
328 Os0037 Chr10:1889830-1891119 LOC_Os10g04120 powdery mildew resistance protein PM3b, putative
329 Os0037 Chr10:2450091-2452032 NA NA
330 Os0601 Chr10:2503739-2504632 LOC_Os10g05160 protein kinase domain containing protein
331 Os0166 Chr10:2653488-2654864 NA NA
332 Os0037 Chr10:2665631-2667194 LOC_Os10g05440 conserved hypothetical protein
333 Os0598 Chr10:2740193-2741243 NA NA
334 Os0974 Chr10:2782766-2785616 NA NA
335 Os3239 Chr10:3318826-3320127 LOC_Os10g06480 retrotransposon protein, putative, Ty3-gypsy subclass
336 Os0949 Chr10:3376491-3377774 NA NA
337 Os0037 Chr10:3437585-3439212 LOC_Os10g06660 transposon protein, putative, CACTA, En/Spm sub-class
338 Os0166 Chr10:3823484-3824694 LOC_Os10g07270 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed
339 Os0486 Chr10:3903721-3906545 LOC_Os10g07410 retrotransposon protein, putative, unclassified
340 Os0053 Chr10:4093704-4095026 LOC_Os10g08014 ABC transporter, putative, expressed
341 Os0166 Chr10:4098079-4104551 LOC_Os10g08014 ABC transporter, putative, expressed
342 Os0250 Chr10:4255202-4256283 NA NA
343 Os0598 Chr10:4388863-4400348 LOC_Os10g08530 hypothetical protein
LOC_Os10g08540 cytochrome P450 76B1, putative, expressed
344 Os0037 Chr10:4412297-4415092 NA NA
345 Os0949 Chr10:4593902-4595706 LOC_Os10g08920 retrotransposon protein, putative, unclassified
346 Os0037 Chr10:4643917-4645698 NA NA
347 Os0601 Chr10:5126561-5127784 LOC_Os10g09890 hypothetical protein
348 Os0624 Chr10:5933269-5935392 LOC_Os10g11140 phosphoglucomutase, chloroplast precursor, putative, expressed
349 Os0053 Chr10:6036677-6037816 LOC_Os10g11310 expressed protein
350 Os0256 Chr10:6073261-6101552 LOC_Os10g11384 transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g11400 retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11420 retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11430 retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g11454 transposon protein, putative, CACTA, En/Spm sub-class
351 Os0378 Chr10:6162901-6163942 LOC_Os10g11560 retrotransposon protein, putative, unclassified
352 Os0974 Chr10:7179096-7180403 LOC_Os10g13670 zinc finger, RING-type, putative, expressed
353 Os3295 Chr10:7691325-7692305 NA NA
354 Os0513 Chr10:7720911-7722506 LOC_Os10g15180 retrotransposon protein, putative, unclassified
355 Os0053 Chr10:7815493-7816464 NA NA
356 Os0513 Chr10:8099379-8100733 NA NA
357 Os0037 Chr10:8759131-8760816 LOC_Os10g17950 protein kinase, putative
358 Os0598 Chr10:9386326-9388435 LOC_Os10g19080 retrotransposon protein, putative, Ty3-gypsy subclass
359 Os0166 Chr10:9651769-9653018 NA NA
360 Os0974 Chr10:9821562-9823131 LOC_Os10g20220 retrotransposon protein, putative, unclassified
361 Os1364 Chr10:9847026-9847759 NA NA
362 Os0486 Chr10:9909734-9911856 LOC_Os10g20370 hypothetical protein
LOC_Os10g20380 transparent testa 12 protein, putative
363 Os0037 Chr10:9959468-9960184 LOC_Os10g20440 retrotransposon protein, putative, unclassified
364 Os0115 Chr10:10050771-10053048 LOC_Os10g20600 zinc finger protein-like 1, putative, expressed
365 Os0166 Chr10:10274183-10275700 LOC_Os10g20960 retrotransposon protein, putative, Ty3-gypsy subclass
366 Os0949 Chr10:10540756-10543459 LOC_Os10g21300 ATP-dependent Clp protease proteolytic subunit, putative
367 Os3239 Chr10:10564693-10565888 NA NA
368 Os0037 Chr10:10677540-10679834 LOC_Os10g21490 hypothetical protein
LOC_Os10g21500 hypothetical protein
369 Os0598 Chr10:10747830-10749325 NA NA
370 Os0661 Chr10:10886906-10888506 NA NA
371 Os0949 Chr10:11056546-11058283 LOC_Os10g22039 protein translocase/ protein transporter, putative, expressed
372 Os0949 Chr10:11309194-11310755 NA NA
373 Os0166 Chr10:11434607-11436904 LOC_Os10g22640 retrotransposon protein, putative, unclassified
374 Os0202 Chr10:11452357-11453410 LOC_Os10g22690 hypothetical protein
375 Os0037 Chr10:11521260-11522807 LOC_Os10g22810 retrotransposon protein, putative, unclassified
376 Os0974 Chr10:11747787-11749170 LOC_Os10g23130 cytochrome P450 90D2, putative
377 Os0053 Chr10:12274743-12276240 LOC_Os10g24560 retrotransposon protein, putative, Ty3-gypsy subclass
378 Os0661 Chr10:12544472-12546325 NA NA
379 Os0949 Chr10:12602238-12604063 NA NA
380 Os0166 Chr10:12611381-12612699 LOC_Os10g25110 RNA binding protein, putative, expressed
381 Os0166 Chr10:12621129-12622386 NA NA
382 Os0256 Chr10:12768088-12769363 NA NA
383 Os0166 Chr10:12778276-12779244 NA NA
384 Os0624 Chr10:12864042-12866556 LOC_Os10g25517 retrotransposon protein, putative, unclassified
385 Os0037 Chr10:12866616-12868430 NA NA
386 Os0166 Chr10:13055834-13082978 LOC_Os10g25880 retrotransposon protein, putative, unclassified
LOC_Os10g25870 dirigent-like protein pDIR12, putative, expressed
LOC_Os10g25840 retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g25830 mitochondrial carrier-like protein, putative, expressed
LOC_Os10g25850 nuclear transcription factor Y subunit A-7, putative, expressed
387 Os0949 Chr10:13277649-13279248 NA NA
388 Os0037 Chr10:13303922-13306003 NA NA
389 Os0037 Chr10:13348895-13350142 LOC_Os10g26370 transposon protein, putative, CACTA, En/Spm sub-class
390 Os0037 Chr10:13548641-13550273 NA NA
391 Os0256 Chr10:13913150-13914457 LOC_Os10g27030 retrotransposon protein, putative, unclassified
392 Os0037 Chr10:13927436-13928676 LOC_Os10g27050 OsPP2Ac-4 - Phosphatase 2A isoform 4 belonging to family 2, expressed
393 Os0238 Chr10:14094253-14095830 LOC_Os10g27330 glycerol-3-phosphate acyltransferase 8, putative, expressed
394 Os0624 Chr10:14468853-14470769 LOC_Os10g28440 sulfate transporter 3.1, putative, expressed
395 Os0037 Chr10:14501794-14503551 LOC_Os10g28510 expressed protein
396 Os0166 Chr10:14512303-14513514 LOC_Os10g28520 CAF1 family ribonuclease containing protein
397 Os0166 Chr10:14800560-14801580 NA NA
398 Os0300 Chr10:14904524-14905466 LOC_Os10g29274 expressed protein
399 Os0378 Chr10:14934920-14936007 LOC_Os10g29360 speckle-type POZ protein, putative
400 Os0023 Chr10:14938349-14940189 LOC_Os10g29380 snRNP protein, putative
401 Os1121 Chr10:14997599-14998851 LOC_Os10g29502 expressed protein
402 Os0116 Chr10:15141140-15142193 NA NA
403 Os0954 Chr10:15241255-15242747 LOC_Os10g30000 transposon protein, putative, CACTA, En/Spm sub-class
404 Os0598 Chr10:15356502-15363284 LOC_Os10g30180 hsp20/alpha crystallin family protein, expressed
LOC_Os10g30190 potassium channel tetramerisation domain-containing protein 9, putative, expressed
405 Os0709 Chr10:15806617-15807818 LOC_Os10g30930 retrotransposon protein, putative, unclassified
406 Os0037 Chr10:15877065-15878186 LOC_Os10g31030 MT-A70 family protein, expressed
407 Os2088 Chr10:15978205-15979295 NA NA
408 Os3295 Chr10:16084154-16085864 LOC_Os10g31290 expressed protein
409 Os0166 Chr10:16110287-16111443 NA NA
410 Os0037 Chr10:16142616-16144331 NA NA
411 Os0239 Chr10:16196244-16197550 NA NA
412 Os0709 Chr10:16308886-16309938 LOC_Os10g31740 glycine-rich cell wall structural protein 2 precursor, putative
413 Os0949 Chr10:16348016-16349003 LOC_Os10g31810 expressed protein
414 Os0949 Chr10:16379856-16385235 LOC_Os10g31856 ATP binding protein, putative, expressed
415 Os0805 Chr10:16492055-16499162 LOC_Os10g32020 expressed protein
LOC_Os10g32030 retrotransposon protein, putative, unclassified
416 Os0037 Chr10:16499180-16501055 LOC_Os10g32030 retrotransposon protein, putative, unclassified
417 Os0949 Chr10:16845692-16846884 LOC_Os10g32800 hypothetical protein
418 Os0166 Chr10:17013406-17014689 NA NA
419 Os0166 Chr10:17065827-17067269 NA NA
420 Os0949 Chr10:17094437-17095912 LOC_Os10g33220 Transposable element protein, putative, MuDR
421 Os0115 Chr10:17097514-17098318 LOC_Os10g33220 Transposable element protein, putative, MuDR
422 Os1121 Chr10:17209803-17211258 NA NA
423 Os0974 Chr10:17459724-17461489 LOC_Os10g33710 expressed protein
424 Os0037 Chr10:17613911-17615558 NA NA
425 Os0974 Chr10:17721745-17724452 LOC_Os10g33940 auxin response factor 16, putative, expressed
426 Os0037 Chr10:17775155-17776623 LOC_Os10g33970 double-stranded RNA binding motif family protein, expressed
427 Os3239 Chr10:17895963-17897508 LOC_Os10g34150 nodulin, putative
428 Os0037 Chr10:17902543-17904225 LOC_Os10g34170 domain found in Dishevelled, Egl-10, and Pleckstrin family protein, expressed
429 Os0256 Chr10:17909800-17912558 LOC_Os10g34180 transcription factor BTF3, putative, expressed
430 Os0037 Chr10:17913030-17914617 LOC_Os10g34180 transcription factor BTF3, putative, expressed
431 Os0513 Chr10:17915647-17917145 LOC_Os10g34200 expressed protein
432 Os1190 Chr10:17939283-17940090 NA NA
433 Os0037 Chr10:18376866-18378475 LOC_Os10g35070 alpha-galactosidase precursor, putative, expressed
434 Os0974 Chr10:18595840-18597473 LOC_Os10g35400 retrotransposon protein, putative, unclassified
435 Os0037 Chr10:18663643-18665232 LOC_Os10g35500 epoxide hydrolase, putative, expressed
436 Os0166 Chr10:18745493-18747217 NA NA
437 Os0949 Chr10:18752332-18753831 LOC_Os10g35680 acetyltransferase, putative, expressed
438 Os0053 Chr10:18802444-18803564 LOC_Os10g35770 expressed protein
439 Os0166 Chr10:18878757-18879931 NA NA
440 Os0949 Chr10:18901559-18903377 LOC_Os10g35980 senescence-associated protein DH, putative, expressed
441 Os0949 Chr10:19158338-19159580 NA NA
442 Os0037 Chr10:19305139-19306374 NA NA
443 Os0166 Chr10:19316758-19318049 NA NA
444 Os0037 Chr10:19343850-19345675 LOC_Os10g36740 cytochrome P450 89A2, putative
445 Os0250 Chr10:19355047-19356338 NA NA
446 Os0166 Chr10:19359413-19360944 LOC_Os10g36780 prolyl carboxypeptidase like protein, putative, expressed
447 Os0166 Chr10:19369131-19370591 NA NA
448 Os0709 Chr10:19466686-19467678 NA NA
449 Os0053 Chr10:19483495-19484659 LOC_Os10g36984 hypothetical protein
450 Os0974 Chr10:19637089-19638568 LOC_Os10g37280 sphingosine kinase, putative, expressed
451 Os0954 Chr10:19655348-19656744 NA NA
452 Os0037 Chr10:19656761-19658062 NA NA
453 Os0037 Chr10:19709226-19714553 NA NA
454 Os0974 Chr10:19785032-19786402 LOC_Os10g37600 expressed protein
455 Os0037 Chr10:19832219-19834428 LOC_Os10g37680 conserved hypothetical protein
LOC_Os10g37670 actin-depolymerizing factor, putative, expressed
456 Os0037 Chr10:19898358-19900379 LOC_Os10g37800 retrotransposon protein, putative, unclassified
457 Os0486 Chr10:20208276-20209906 LOC_Os10g38450 receptor-like protein kinase precursor, putative, expressed
458 Os0974 Chr10:20512332-20513908 LOC_Os10g39100 domain of unknown function DUF614 containing protein, expressed
459 Os0974 Chr10:20719010-20720556 LOC_Os10g39440 hexose transporter, putative, expressed
460 Os0486 Chr10:20865948-20867517 NA NA
461 Os0486 Chr10:20954782-20956046 NA NA
462 Os0037 Chr10:21091913-21093213 NA NA
463 Os0805 Chr10:21103973-21105819 LOC_Os10g40020 WW domain-containing oxidoreductase, putative, expressed
464 Os0974 Chr10:21197074-21198649 LOC_Os10g40210 retrotransposon protein, putative, Ty3-gypsy subclass
465 Os0486 Chr10:21211329-21213106 NA NA
466 Os0486 Chr10:21314659-21316048 LOC_Os10g40400 retrotransposon protein, putative, unclassified
467 Os0805 Chr10:21473567-21475925 LOC_Os10g40650 holliday junction resolvase, putative, expressed
468 Os0598 Chr10:21558008-21559835 LOC_Os10g40780 transcription regulator, putative, expressed
469 Os0598 Chr10:22002717-22004026 LOC_Os10g41560 expressed protein
470 Os0037 Chr10:22032661-22035288 NA NA
471 Os0486 Chr10:22088315-22090022 NA NA
472 Os0486 Chr10:22090202-22091876 NA NA
473 Os0974 Chr10:22276634-22278377 LOC_Os10g42040 expressed protein
474 Os0037 Chr10:22316738-22317978 LOC_Os10g42100 pyruvate kinase isozyme G, chloroplast precursor, putative, expressed
475 Os0610 Chr10:22439587-22440443 NA NA
 
 
   
 
For Rice Comments/Questions send mail to the MSU Rice Genome Annotation Project team.
 
Photographs courtesy of Robin Buell (MSU), Jiming Jiang (University of Wisconsin), and the USDA Agricultural Research Service